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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcctgctttaactttttattgttataaaatttattaaatcttcattctgcttagttgtaagaaaaaaaagtgtaaaaacgtcttgtttatttagtcatcttctttcctttgccagGTCATTGCTGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCACGA

Basic information

species Glycine max
transcript GLYMA03G14690.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14690.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 3'ss of exon 6
-------------gtgagttcct--gctttaactttttattgttataaaatttattaaatcttcattctgcttagttgtaagaaaaaaaagtgtaaaaacgtcttgtttatttagtcatcttctttcctttgccagGTCATTGCTGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCACGA
              |||||| |   |   ||   |||| |  || | | | |  ||    ||||  | |  | || |  | |  |   |    | |  |    | ||| | ||| |  |  ||||   ||   |||||||| || || || || |||||||| || ||||||||| ||||||| || || |||||||||||||| ||
gtaagtttgaaatatgagtttcatagacatatgattttgtccttctgataatcttttttgcttctctttaat-agattcaggttaggtatactttatgatacttggttgaatta-ttgtgctcttgttttcatcagGTCATAGCAGACATTGATAATGATGGGGTGTCAGAAATGGTTGTTGCTGTGTCCTATTTCTTTGATCATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaaaaagtgtaaaaacgtcttgtttatttagtcatcttctttcctttgccagGTCATTGCTGATATCGACAATGATGGTGTTTCAGAAATGATTGTTGCCGTTTCTTATTTCTTTGATCACGA
                             tttagtcatcttcttt  CT-rich tract
                      ttgtttattta  TA-rich tract