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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagcttttgtaattattatatttataattggctagctgtatgtttcaggaattgatcctcttttgtcctttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT

Basic information

species Glycine max
transcript GLYMA03G07460.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G416667_T03 (Zea mays), 3'ss of exon 9
---------------gtaatgagcttttgtaattattatatttataattggctagctgtatgtttcaggaattgatcctcttttgtcctt--tttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT
                   |  | | | ||||  | |   ||    |||    |    ||||||      | || |    | |  | |||  |||  ||| |||||||| ||||||||  |  | || || || |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| ||||||
acatgtacattctcccctttcggatatagtaacaaatgagttgcctattcctaatacatatgttgacactactgttggcttataattcttattttctcagGTATGATCTGAATGTTGATTTGCTAGATGTCCATGCAGACAAAAGCACATTTCATCGTTTTGACAAATTCAATCTAAAATACAATCCATGTGGCCAAAGT

upper sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------------------------------------------------------------------------------------------gtaatgagctt----ttgtaattattatatttataattggct--agctgtatgtttcaggaattgatcctcttttgtcctttttaaca-------gATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT
                                                                                                  ||   |  |      |||    ||||  |||| | |     |  | |   |      || |||| | | | ||   |   ||| ||||       ||||||| || || || ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||| || || || || |||||||||||||||
gtaattacatttccaacttcttagaattcccaacttaactctatctgaatctgatggctgcaagactattagattaccctcttaggagcctcctagttgttgcgcaccgcagattgcctgtattgcattttttaccatttttaccatgacaccgaagaaattaacctttttccctttgtttgaacattgcacagATATGACCTGAACGTCGACCTTTTGGATGTTCATGCAGACAAAAGTACCTTTCATCGTTTTGATAAGTTCAACCTAAAGTATAACCCTTGTGGTCAAAGT

upper sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------------gtaatgagcttttgtaattattatattta-taattggctagctgtatgtttcaggaattgatcctcttttgtccttttt-aacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT
                                                  ||   |||  |   |  |||     |||| | |||  | |  |  |   |      ||     | ||    |  | ||| ||||| ||||| || |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||||||||||| || |||||||| || |||||||||
gtaataaaaatttgtttttttttttaatactatttgaccaagatgtgtgtgtggggagtgtaattttttacaccttttagtcatttaccattttgaaactctgaatataacctcactgaacttttgtttgaacagGTATGACCTGAATGTTGACCTTTTAGATGTTCATGCAGACAAGAGCACATTTCATCGTTTTGATAAGTTCAATCTCAAGTACAATCCCTGCGGTCAAAGT

upper sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S168_82V6.1 (Physcomitrella patens), 3'ss of exon 8
--------------------gtaatgagcttttgtaattattatatttataattggctagc-tgtatgtttcaggaattgatcctcttttgtcctttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT
                     |  |   |||||   | |||   | ||  || ||  |  | ||||| | |   |   || ||   || ||||    ||  ||| || || || ||||| ||| |  |||| ||||| || ||||| | ||| |||||||| || || |||||||| || ||||||||||||||||| || |||
gctttcgtcttctaattatttttgtttcctttttatagtataccactttgaaatgattttcatgtatatctaccgtgctggtc---ttgtgtctgaattg-cagTTACGACCTTAATGTGGACTTGCTGGATGTTCATGCTGACAAAAATACGTTTCATCGTTTCGACAAGTTCAACCTGAAATACAATCCTTGTGGCCAGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312490|gb|BG406141.1|BG406141
EST:     GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGG                         ATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT
genomic: GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGGgtaatgagct ... tttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT
EST: gi|8283556|gb|BE021115.1|BE021115
EST:     GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGG                         ATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT
genomic: GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGGgtaatgagct ... tttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT
EST: gi|22541836|gb|BU091679.1|BU091679
EST:     GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGG                         ATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT
genomic: GGGACATATCTAACATTGGAAGAGGTTTTCAAGAGTTTAGATTTAACTGGgtaatgagct ... tttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattggctagctgtatgtttcaggaattgatcctcttttgtcctttttaacagATATGATCTCAATGTTGACCTTTTGGACGTTCACGCAGACAAGAGTACTTTTCATCGCTTTGATAAGTTCAATCTTAAATACAATCCTTGTGGTCAAAGT
                          aattgat  putative branch site (score: 4)
                            ttgatcctcttttgtc  CT-rich tract
                                             tttttaaca  TA-rich tract