Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgaattgaatttttgttacttttgaactttttcatgtgattagcactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT

Basic information

species Glycine max
transcript GLYMA03G04500.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461676|gb|CD403704.1|CD403704
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACCATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|27445915|gb|CA953038.1|CA953038
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAGAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|254322493|gb|GR837907.1|GR837907
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|193372010|gb|FK334625.1|FK334625
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGA
EST: gi|208110383|gb|GD911811.1|GD911811
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: gi|208055198|gb|GD853719.1|GD853719
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|193362081|gb|FK326487.1|FK326487
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208049718|gb|GD847081.1|GD847081
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAGGAGCAGGAGCAGTGGTCTGGCA
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCA
EST: gi|31455890|gb|CD397918.1|CD397918
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGATAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|254316348|gb|GR827885.1|GR827885
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208251842|gb|GE045561.1|GE045561
EST:     AGTTCAAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAG-AAAGTTCGTG
genomic: AGTTC-AGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTG
EST: gi|208025200|gb|GD823864.1|GD823864
EST:     TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATG                         ATTGCTGTTTCAAGAAAG
genomic: TTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaattt ... attatggcagATTGCTGTTTCAAGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT
                                  ttttgat  putative branch site (score: 4)
                       tacattcaatattttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatgaattgaatttttgttacttttgaactttttcatgtgattagcactgtttctgggtatcaaacagtacattcaatattttgatatgaattatggcagATTGCTGTTTCAAGAAAGAGCAGGAGCAGTGGTCTGGCAGAAAAGTTCGTGGAACTGTAAATATTAAGACAAAGGAGATAATCTAAATTGATATATAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT