1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgccttatttcaaagaaacacaatcttggtattgaattgccatgtgaaatgtcagtttcatacaatcattttctgataataatttcaaatgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTGTATCACTATTTAAATCATTACAATCTCTTTGGTTCTGGATACCGATCTT
species | Glycine max |
transcript | GLYMA03G01960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG GTGATGCCTAAGCAACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCCGEST: gi|120496587|gb|EH224754.1|EH224754
genomic: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAGgtaatactgt ... tgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTG
EST: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG GTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTGEST: gi|15203065|gb|BI425833.1|BI425833
genomic: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAGgtaatactgt ... tgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTG
EST: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG GTGATGCCTAAGCAACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTGEST: gi|120496384|gb|EH224551.1|EH224551
genomic: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAGgtaatactgt ... tgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTG
EST: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAG GTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTG
genomic: TGTCTTGGTGTGCTGGCTTTGGAGGATCATTCTATAATTCTTATTTTGAGgtaatactgt ... tgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTG
tgaaatgtcagtttcatacaatcattttctgataataatttcaaatgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTGTATCACTATTTAAATCATTACAATCTCTTTGGTTCTGGATACCGATCTT
ttctgat putative branch site (score: 3)
aatcattttctgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgccttatttcaaagaaacacaatcttggtattgaattgccatgtgaaatgtcagtttcatacaatcattttctgataataatttcaaatgatctgcagGTGATGCCTAAGCTACCAGGCTTTGAGGAGAGGAGAGACCTTTATATGCTGTATCACTATTTAAATCATTACAATCTCTTTGGTTCTGGATACCGATCTT
-tgcctta
- - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - ccatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcataca