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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAG

Basic information

species Glycine max
transcript GLYMA03G01680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01680.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
gtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAG
                                                ||   | |  |   |  ||  |||   |    || || ||| ||    || ||| | ||  ||||| ||| | || |  |||  ||||||||||||||||||||||||||||||||||||||||| ||  || | ||||  |||| ||| |||||||| || ||||| ||||||
------------------------------------------------gttcatttctttaaatctacaacta--ttgtcatattttatctaatgcatgtca-tattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395881|gb|EV265758.1|EV265758
EST:     ATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAG                         TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAG
genomic: ATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttat ... atgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAG
     tttagattatatcaat  TA-rich tract