1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atcatacttacaccatgtttttttcactacaaatttatttgtgtgctttagcttataattaataaaaaaattatacatagtatgaacatttcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAAGGAAATGTCATATTCACTCTGAT
species | Glycine max |
transcript | GLYMA03G01210.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCCTATTTTATTCTTGC-GGGGATTTAAACA TGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTEST: gi|193419829|gb|FK381897.1|FK381897
genomic: TGCCTATTTTATTCTTGCGGGGGATTTAAACAgtaagcatgc ... tcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTT
EST: TGCCTATTTTATTCTTGCGGGGGATTTAAACA TGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTEST: gi|209714421|gb|BW659105.1|BW659105
genomic: TGCCTATTTTATTCTTGCGGGGGATTTAAACAgtaagcatgc ... tcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTT
EST: GGGATTTAAACA TGCCAATTACATACCAAGTTCACCGTCT-CGNAGATGGAAAGAGC-TTGCTEST: gi|209714420|gb|BW659104.1|BW659104
genomic: GGGATTTAAACAgtaagcatgc ... tcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCG-AGATGGAAAGAGCTTTGC-
EST: GGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACA TGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTT
genomic: GGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACAgtaagcatgc ... tcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTT
ctttagcttataattaataaaaaaattatacatagtatgaacatttcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAAGGAAATGTCATATTCACTCTGAT
aattaat putative branch site (score: 3)
catttcttttcc putative PPT
ttataattaataaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatacttacaccatgtttttttcactacaaatttatttgtgtgctttagcttataattaataaaaaaattatacatagtatgaacatttcttttccagTGCCAATTACATACCAAGTTCACCGTCTCCGAGATGGAAAGAGCTTTGCTTCAAGGAAAGTGGATGGAATTCAAAAAGGAAATGTCATATTCACTCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -acaccat
- - - - - - - - - - - - cactaca
- - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac