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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattgtaagtgtttataatataaaacttccaagatattaagaggcagatcaatatttatttaactgtttacttttctttttctgcctcctgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAG

Basic information

species Glycine max
transcript GLYMA03G01100.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409520|gb|EV279328.1|EV279328
EST:     GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTT                         GGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
genomic: GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatag ... tgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
EST: gi|254319501|gb|GR829013.1|GR829013
EST:     GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTT                         GGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
genomic: GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatag ... tgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatcaatatttatttaactgtttacttttctttttctgcctcctgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTCAAG
             atttaac  putative branch site (score: 3)
                   ctgtttacttttcttt  CT-rich tract
      aatatttatttaactg  TA-rich tract