Sequence
atgc intronic sequence ATGC exonic sequencegtctgagttgtttcttgttctatgttctcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
Basic information
species | Glycine max |
transcript | GLYMA02G46950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os03g11660.1 (Oryza sativa), 3'ss of exon 4
---------------------------------------------------gtctgagttgtttcttgttctatgttctca-acagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
| | || | | | | |||| || | | |||||||||| |||||||||| |||||| | | || || ||||| |||||| |||| |||| ||| ||||| | |||||||||||| |||||||| || |
gtttgcatgcttcttatgttatttcttctgtatatttctttctcacatgtagaccttttttatgcctatgctataatcaaatatagGAAAAGAACACAAACATCAAATGCTTCTTAATGGACCCACCTGGATCTGGTCTGTTCAATAAGGTTACTAGAGGGGTGATGTACACAAAAGAGGAAGCTG
upper sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G128744_T01 (Zea mays), 3'ss of exon 2
-----------------------------------gtctgagttg----tttcttgtt-ctatg----ttctca-acagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
|| || | | | || | ||||| | || | |||||||||| | |||||| || || | | || |||||||| |||||| |||| |||| ||| || || | |||||||||||| ||||||||||| |
gttagatgcttactatttttttgtttgtatattttatcctagataaacatcttttatgactatggtactccttatgtagGAAAAGAACAGGAGCATCAAATGTTTTTTAATGGACCCTCCTGGATCTGGTCTGTTCAATAAGGTTACCAGAGGGGTGATGTACACAAAAGAGGAGGCCG
upper sequence: GLYMA02G46950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0015g00380.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------------------------gtctgagttgtttcttgttctatgttctcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
||| | || | |||||||||||| | |||||| ||||| ||||| || | || |||||||| ||||| ||||| |||| | |||| |||| || |||||||| | ||||||||| |
gtcacttttcctctccatctttttatcaaaccttttttctgcacttcaattgtgcaaggaaagtcactgtagtcattacatgttcaacagGAAAAAAGTCCAAATATCAAATGCTTTCTGATTGACCCTCCTGGTTCTGGCTTGTTCAATAAGATAACAAGGGGAGTAATGTACACTAGAGAGGAGGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctgagttgtttcttgttctatgttctcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
tgttctc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgagttgtttcttgttctatgttctcaacagGAAAAGAATCCAAACATCAAGTGCTTCCTCGTAGATCCTCCTGGCTCTGGTTTGTTTAATAGGGTAACTAGGGCGGTGATGTACACCAAAGAGGAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG