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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgttaaatgagattataatcaccatcagatactgttcttattaatttaatctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGA

Basic information

species Glycine max
transcript GLYMA02G46450.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46450.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 6
gtatttgttaaatgagattataatcaccatcagatactgttcttattaatttaatctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTCGATACATTGGTTGCT-AAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGA
        | ||  |  | |||||   ||| | | |  |       ||||  |   ||||||  | || |||    |   ||| |||   |||||||||       || || | ||||      || |||| | || || |||||||||||  |||||| | |||||||||||||||||||| ||  ||||||| || || ||||||||||| ||||||||| |||||| 
--------tgaa--aactgataatt-tcattaaaaa--gaagaagataatcca---tgctgttat-gttagcttggcttgatg-tgct-tattattgga-------tggttttcttggctc---tgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259220|gb|GE055470.1|GE055470
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAG
EST: gi|15813527|gb|BI785802.1|BI785802
EST:     CTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: CTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|207735001|gb|GD712532.1|GD712532
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|51334691|gb|CO978557.1|CO978557
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|26048331|gb|CA784835.1|CA784835
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|193511966|gb|FK471418.1|FK471418
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|10843940|gb|BF067293.1|BF067293
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGCATGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGA
                attattggaataattt  TA-rich tract