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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaagttattttgtttagaaatgactagctactccagatttactatcacctttctttgtgcagtcatgttgttactatgttttaaatatctacaaagatatacaattagtttctttattgattgtaattctttacatattgtagACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATC

Basic information

species Glycine max
transcript GLYMA02G46350.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 8
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtaagttattttgtttagaaatgactagctactccagatttactatcacctttctttgtgcagtcatgttgttact-atgttttaaatatctacaaagatatacaattagtttctttattga--ttgtaattctttacatattgtagACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATC
                                          ||    ||  |  || || ||||    |||  |||| | | |||  ||||| |||   |  | || | |   |||    |||||  | || | |  ||   | |  ||||| || ||||| || ||||| ||||| ||||| |||||| ||||||| ||||| || || ||||||||||| || || ||| ||||||||  || |||||
-------------------------------------gtgagttgggcattgc--ttattggtgctcctatggcgttatttaagttccaaata-ctattgaattctaaactatatttgaccattgaactagttacttgttttttttcttagACTAACAGTGATTTCGATGCAAAACCTATGGTAATGCTTCTGGGTCAATACTCCACAGGAAAAACAACATTCATTAAGCATTTGCTTAAATCTACTTATC

upper sequence: GLYMA02G46350.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g01130.t01 (Vitis vinifera), 3'ss of exon 8
--------------------gtcagtaagttattttgt--ttagaaatgactagctactccagatttactatcacctttctttgtgcagtcatgt-tgttactatgttttaaat-atctacaaagatatacaattagtttctttattgattgtaattctttacatattgtagACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATC
                    |    ||| |  |||  |  | ||||||  | |  || ||  ||||       |  ||| ||||   | | |  | | || |||| |||||||  ||  |||| |||||| ||| || || |   ||| |  | ||   |||  | ||| |||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || || |||||| |||| || ||||||||||
gtaagcgagaaatacacccagcttttaattgctttcatcctcagaaatagcaaaataatcttgattctaatgaatgtttgtttg---atttacatctattgctatattttaaaccatggacaatgatatataatgagcttatcacttgctgttgatgtgttatttgttgcagACAAATAGCGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGAAAAACTACTTTCATTAAACATTTGCTGAAGAGTAGTTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaaagatatacaattagtttctttattgattgtaattctttacatattgtagACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATC
                          tattgat  putative branch site (score: 3)
                                      ttctttac  putative PPT
                        tttattgattgtaatt  TA-rich tract