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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcctcagtacctgatgctttgctatatgttagccatgctacttacccaccttagcctattctcctttgttcttatgattctgagtacttgttttatttatttatttattttgtgtgtgtgtgtgaacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATC

Basic information

species Glycine max
transcript GLYMA02G46040.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46040.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G50670.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgattcctcagtacctgatgctttgctatatgttagccatgctacttacccaccttagcctattctcctttgttcttatgattctgagtacttgttttatttattt-atttattttgtgtgtgtgtgtgaacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATC-
                                                      | | || |  |||||||  |||||       |   || || ||| ||  ||   |   |  |||  | |     |  | |   ||||| || ||||| ||||| |||||||||||||||||||| || ||||| |||| ||||   | |   ||||||||| |    || | | |     | ||   
----------------------------------------------------gtcattgctttgtctccttaattctt----catttgata-ttatttcatagatcagacagagcttgaattttgaacttgaaa---cagGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTTAATTTTCAAGAATACAAATAAGAGAATG-ATTGATTTGATTCTTTTATACAGTTCCAAGAAACAA

upper sequence: GLYMA02G46040.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S6_193V6.1 (Physcomitrella patens), 3'ss of exon 7
gtgattcctcagtacctgatgctttgctatatgttagccatgctacttacccaccttagcctattctcctttgttcttatgattctgagtacttgttttatttatttatttattttgtgtgtgtgtgtgaacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATC
|| | | |  |  | ||  ||   |||| |||  |||  ||  |    || ||  || |    ||   |   |     | ||   |||  ||||   ||   |||  |   | |   ||  | ||  ||     | ||||| ||||||||||||||| |||| ||||| |||   ||||||||||||||||| ||                                            
gtaagttcaaataaactattg---tgct-tataatagttata-tgtagacacagtttggttcgtttcac---gccaccacga---tgaacactttgcttgaatatg-acggaatacctgaatttgattgggttatgcagGAAGCAGTGGAGCATGCAAAAGCCACTGGCCATACCAACTTCCAAGAGTACAGCTAG-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254337569|gb|GR845246.1|GR845246
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|6567071|gb|AW234698.1|AW234698
EST:     CCTT-ACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGGCATGTTAACTTCCAAGAGTAC
genomic: C-TTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|14259696|gb|BG882604.1|BG882604
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGG--AG--G                         ----CAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|6719113|gb|AW306760.1|AW306760
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTGTC-AAGAGTA
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACT-TCCAAGAGTA
EST: gi|31472794|gb|CD414822.1|CD414822
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|15000986|gb|BI321800.1|BI321800
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGTATTTTGTACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|151398656|gb|EV268527.1|EV268527
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|192323133|gb|FK016324.1|FK016324
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|31467112|gb|CD409140.1|CD409140
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
EST: gi|23734669|gb|BU765573.1|BU765573
EST:     ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAG                         GAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC
genomic: ACTTCACTCTCCGCTGTGGGGTATGCCAAATTGGAGTAATTGGTGAGAAGgtgattcctc ... aacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagtacttgttttatttatttatttattttgtgtgtgtgtgtgaacatttcagGAGGCAGTGGAGCATGCACAAGCAACTGGTCATGTTAACTTCCAAGAGTACAGATAATGCACTCCGTTGATTTGAATGGGATACAAATTCATGTGTAATC
     tacttgttttatttat  TA-rich tract