1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtcttaatatgaatcattaactttctggaccagatctcgtatttcatatcctaaccaatattttatttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACTGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAAAAGATCCTTGAC
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|208041747|gb|GD843463.1|GD843463
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATEST: gi|208146996|gb|GD950613.1|GD950613
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAAT
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAAEST: gi|193370049|gb|FK336359.1|FK336359
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAA
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|193328139|gb|FK293376.1|FK293376
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: ATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|4282637|gb|AI440556.1|AI440556
genomic: ATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|208153997|gb|GD953958.1|GD953958
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|298181814|gb|HO025989.1|HO025989
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|193406246|gb|FK370585.1|FK370585
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: TCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTTAEST: gi|192323617|gb|FK017483.1|FK017483
genomic: TCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGC-TTA
EST: AGTCACAAGAAAGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTT-GAGAAAA-TCTGCTTACEST: gi|151404405|gb|EV274215.1|EV274215
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|208080975|gb|GD873831.1|GD873831
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: TCACAAGAAAGGTTTACTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACEST: gi|19271087|gb|BM887343.1|BM887343
genomic: TCACAAG-AAGGTTT-CTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
actttctggaccagatctcgtatttcatatcctaaccaatattttatttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACTGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAAAAGATCCTTGAC
tcctaac putative branch site (score: 1)
tattttatttttcc putative PPT
taaccaatattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcttaatatgaatcattaactttctggaccagatctcgtatttcatatcctaaccaatattttatttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACTGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAAAAGATCCTTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA