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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgatcggcaatttaccatttcatctaatcttagaagtctcttttttgtacattggttgatagtgttgaatatatacacttcactatatattattcctaattttattttcagGAAGAAAGTGCTTTTCAGCGACACTGTGGGATTCATATCTGACTTGCCTGTACAG

Basic information

species Glycine max
transcript GLYMA02G44930.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327889|gb|FK022448.1|FK022448
EST:     CTGTTTGCAACAGTTGATCCTAGAGTAAGAAGTGCTGTTCTTCCTTCAGG                         GAAGAAAGTGCTTTTCAGCGACACTGTGGGATTCATATCTGACTTGCCTGT
genomic: CTGTTTGCAACAGTTGATCCTAGAGTAAGAAGTGCTGTTCTTCCTTCAGGgtaatttgat ... ttattttcagGAAGAAAGTGCTTTTCAGCGACACTGTGGGATTCATATCTGACTTGCCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatagtgttgaatatatacacttcactatatattattcctaattttattttcagGAAGAAAGTGCTTTTCAGCGACACTGTGGGATTCATATCTGACTTGCCTGTACAG
                                     tcctaat  putative branch site (score: 2)
                                           ttttattttc  CT-rich tract
                      ttcactatatattatt  TA-rich tract