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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattctccttaatgcaactatgatgtgaaagtaaggtagagaaactatgtttctgtggtcagtattacttttgcagttttgcttatgtctgtccatgtataaaatgtgagtcttgcatgcttagttgttttatgtgtaaggtatttactccttattacttcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAG

Basic information

species Glycine max
transcript GLYMA02G44810.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44810.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 6
gtgagttcattctccttaatgcaactatgatgtgaaagtaaggtagagaaactatgtttctgtggtcagtattacttttgcagttttgcttatgtctgtccatgtataaaatgtgagtcttgcatgcttagttgttttatgtgtaaggtatttactccttattacttcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAG
                                                                       |||||  ||| || ||||  |  | | |   ||| |||  |   | ||||| ||  ||| || |||  || ||||  |||||     |  | ||    | ||||| || ||||||||||| ||||||||||||||||||||||||||||| || | ||||   || |||||||| || || ||  || |||| ||||| || |
----------------------------------------------------------------------tttactagtgctgtcttgccaaactttctttttgtttaagtta-aattcttg-atcattatttatttcttgagtaatttatttcaagttggtaaccc--ttcagGGAGAGCTGACATATGGAAAGATTGGAGAATGGCGTTTTGACAAGAGATCATTTCTTAGTGGCCCTCCACCAAAGAATCTCACCCTACCTCCTCCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710619|gb|BW676545.1|BW676545
EST:     AGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG                         GGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCT
genomic: AGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAGgtgagttcat ... cttcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgcttagttgttttatgtgtaaggtatttactccttattacttcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCTTATCTTTTGGGTCCTCCACCCAAAAACCTGCCCTTACCGCCTCCAGGAG
                                   ctccttattacttc  CT-rich tract
            ttgttttat  TA-rich tract