Sequence
atgc intronic sequence ATGC exonic sequence...gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
Basic information
species | Glycine max |
transcript | GLYMA02G43910.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
-----------------gagtgatgaaatgcaaaatgttacagataaccctgtgtagctt----tgataccgtaaaggtgtatgtggtagaa--actaatcttatgcttctcttttattc--cagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
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gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttat--tccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
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-actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatata-tatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403177|gb|EV272987.1|EV272987EST: ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAAT GCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA
genomic: ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgtta ... tttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
aactaat putative branch site (score: 2)
tcttatgcttctcttt CT-rich tract
taatcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
-agtgatg
- - - - -aatgcaa
- - - - - - - - - - - - - - - -cctgtgt
- - - - - - - - - - - - - - - - - - - - - -tgatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaactaa