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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC

Basic information

species Glycine max
transcript GLYMA02G43910.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
-----------------gagtgatgaaatgcaaaatgttacagataaccctgtgtagctt----tgataccgtaaaggtgtatgtggtagaa--actaatcttatgcttctcttttattc--cagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
                    ||||    |     || |    |||  |   |  ||||||    |  ||   | || ||   | ||||   |   |     || ||||| |    | ||   ||||| |||||| ||||| || || ||||| || |||||||| |||||||||||||| || || ||| | || ||| | ||| ||||| | ||||| || || 
gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT

upper sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
gagtgatgaaatgcaaaatgttacagataaccctgtgtagctttgataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttat--tccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
 | |    | ||  | ||   || | |||    | | ||  | |       || |  | ||| |  || | | | ||     || |    ||| |  | ||| || ||||| || ||  | || |||||||| ||||||||||||||| | ||||| |||||||| ||||| ||| ||||||||||| ||||||| || || 
-actttaaatatatataaatatatatatatatatatatatatatatatatatatatatatatata-tatatatttattaacagcattgtctttgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403177|gb|EV272987.1|EV272987
EST:     ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAAT                         GCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA
genomic: ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgtta ... tttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataccgtaaaggtgtatgtggtagaaactaatcttatgcttctcttttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC
                         aactaat  putative branch site (score: 2)
                               tcttatgcttctcttt  CT-rich tract
                            taatcttat  TA-rich tract