Sequence
atgc intronic sequence ATGC exonic sequencegtacaccaattattataacagaaaaaacccagcaaatttaactgtagaattgcaattcaggaaatttaattataactaacttcttaaccataccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
Basic information
species | Glycine max |
transcript | GLYMA02G43150.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G43150.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G56050.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacaccaattattataacagaaaaaacccagcaaatttaactgtagaattgcaattcaggaaatttaattataactaacttcttaaccata----ccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
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--------------------------gtatttccggtcaaccagttttcttatattttaaggattttgatttctatcaccttatcgattatggtttcgatgatttcagATCGAAATGTTATCCAAGATAAACCACAAGAATTTTGTCAACCTTCTTGGTTACTGTGAAGAAGAAGAACCTTTCACTAGGATCTTGGTCTTTGAATATG
upper sequence: GLYMA02G43150.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G40270.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacaccaattattataacagaaaaaacccagcaaatttaactgtagaattgcaattcaggaaatttaattataactaacttcttaaccataccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
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--------------------gtattgttttccccatttttgttttcttataacaac----aacatatagtcg--acttagcgcgttctgttttcacgatttcagATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATG
upper sequence: GLYMA02G43150.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0067g01550.t01 (Vitis vinifera), 3'ss of exon 7
gtacaccaattattataacagaaaaaacccagcaaatttaactgtagaattgcaattcaggaaatttaattataactaacttcttaaccataccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
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--------------gtacttgagagattacatcca-ctaaactttgtggttttgattc-----atcttggtagtccttacattttctttg-gttgtggtttcagATCGAAAGGTTATCAAAAGTGAACCACAAGAATTTTGTCAACCTTCTCGGATATTGTGAAGAAGAGGAACCTTTCACCAGAATGATGGTTTTTGAATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6916048|gb|AW397578.1|AW397578EST: CATCATCCAGGAATTGGTCAAAGACTTTAGAAGCTCAATTTAGAAGCAAG ATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGA
genomic: CATCATCCAGGAATTGGTCAAAGACTTTAGAAGCTCAATTTAGAAGCAAGgtacaccaat ... atggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcaattcaggaaatttaattataactaacttcttaaccataccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
aaatttaattataact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaccaattattataacagaaaaaacccagcaaatttaactgtagaattgcaattcaggaaatttaattataactaacttcttaaccataccatggcttcagATAGATACATTGTCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATACTGTGAAGAAGAGGATCCTTTCACCAGAGTGTTGGTTTTTGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT