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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgaaagagctgttaagcatgtggtattgacaattctattatagttataggcaatctgtaatttcagttttttaattgttaacttcaatttcgaagcagACTCTACCAAGACTAGTGGATTCACCGAGTTTGAAAAATTTGCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAG

Basic information

species Glycine max
transcript GLYMA02G41810.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165190|gb|HO011239.1|HO011239
EST:     TTGGTGGGAATCAGTTTGGGCAGTTGGGAACTGGTGCTGATCAAGCCGAG                         ACTCTACCAAGACTAGTGGATTCGCCGAGTTTGAAAAATTTGCATGCTGAG
genomic: TTGGTGGGAATCAGTTTGGGCAGTTGGGAACTGGTGCTGATCAAGCCGAGgtatgatgta ... ttcgaagcagACTCTACCAAGACTAGTGGATTCACCGAGTTTGAAAAATTTGCATGCTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataggcaatctgtaatttcagttttttaattgttaacttcaatttcgaagcagACTCTACCAAGACTAGTGGATTCACCGAGTTTGAAAAATTTGCATGCTAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAG
                                tgttaac  putative branch site (score: 2)
              taatttcagtttttta  TA-rich tract