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...taacttgttcaagcttactgtgtgtttggttttgtatgttgtaacttgttggtgcttttgcggaaaattatactattgttgcatttttttttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGTGGACGGGCATACATCCGTGATACTCTTGCCATCATGGATGAGCTTATG
species | Glycine max |
transcript | GLYMA02G41770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAG GTGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGEST: gi|151395122|gb|EV264993.1|EV264993
genomic: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAGgtacactttc ... ttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGG
EST: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAG ATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGEST: gi|17519689|gb|BM188731.1|BM188731
genomic: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAGgtacactttc ... ttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGG
EST: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAG ATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGEST: gi|298173781|gb|HO017117.1|HO017117
genomic: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAGgtacactttc ... ttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGG
EST: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAG ATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGG
genomic: ACCTATGATTTACTGCATGCTGCAAATCTGCTTTCTGTTGAGAAGAAAAGgtacactttc ... ttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGG
ttgttggtgcttttgcggaaaattatactattgttgcatttttttttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGTGGACGGGCATACATCCGTGATACTCTTGCCATCATGGATGAGCTTATG
ttgcatttttttttct CT-rich tract
aaaattatactattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttgttcaagcttactgtgtgtttggttttgtatgttgtaacttgttggtgcttttgcggaaaattatactattgttgcatttttttttcttgtcagATGCAATTTGTCATCAATTATGCTTGAGATGGATCGAATACTAAGGCCTGGTGGACGGGCATACATCCGTGATACTCTTGCCATCATGGATGAGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - -ttcaagc
- - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttttgc