1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctctttgaaaaaaatgtgatatttttttcccttaattattttgattcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCT
species | Glycine max |
transcript | GLYMA02G36960.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGCAGEST: gi|58025341|gb|CX712082.1|CX712082
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A--AGgtatttaaaa ... acttcagc
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCAEST: gi|57575838|gb|CX548809.1|CX548809
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCTTGATGCTGTGCAEST: gi|207833730|gb|GD807171.1|GD807171
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG CEST: gi|207833730|gb|GD807171.1|GD807171
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG CEST: gi|207833730|gb|GD807171.1|GD807171
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG CEST: gi|207833730|gb|GD807171.1|GD807171
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG CEST: gi|192295491|gb|FG987105.1|FG987105
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG TAGCA-GAGAATCAAGTGGTTTTTCTTGGATCAATAATTCCTGATGCTGTGEST: gi|58021429|gb|CX708170.1|CX708170
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGA-TCAAGTGGTTTT-CTTGGATCAATAATTCCTGATGCTGTG
EST: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
ttcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCT
atttgat putative branch site (score: 5)
ttatgtatatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctttgaaaaaaatgtgatatttttttcccttaattattttgattcctctgaagtggatttgggaagtcagcttatgtatatttgatgacttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG