1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cactaagcatttgtataagctctggtagaggctggacctgaaagatatatctgtgaaaatgcttgatcctgattactattgcaaactattgtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGCGGCTGCCATTAGAGGAAAGTTACTG
species | Glycine max |
transcript | GLYMA02G36530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGEST: gi|151406149|gb|EV275964.1|EV275964
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGEST: gi|192304831|gb|FG997041.1|FG997041
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGEST: gi|21677539|gb|BQ629890.1|BQ629890
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTTGTCCCTCAATTGCTG GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
tatatctgtgaaaatgcttgatcctgattactattgcaaactattgtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGCGGCTGCCATTAGAGGAAAGTTACTG
tcctgat putative branch site (score: 3)
ttgttttt putative PPT
aaactattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactaagcatttgtataagctctggtagaggctggacctgaaagatatatctgtgaaaatgcttgatcctgattactattgcaaactattgtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTGATGTGAGTGGGGAGAAACTATGGCGGCTGCCATTAGAGGAAAGTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - gcatttg
- - - - - - - - - - - - - -gaggctg
- - - - - - - - - - - - - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - atctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaac