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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgacactatcagaacttccattgacttattgaatttgtgataatttaaaactcttatgagcatgtctgacatagaatatgttttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG

Basic information

species Glycine max
transcript GLYMA02G34640.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021530|gb|CX708271.1|CX708271
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|192305577|gb|FG998333.1|FG998333
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|57575186|gb|CX548161.1|CX548161
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
EST: gi|254338362|gb|GR845612.1|GR845612
EST:     TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAG                         CTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
genomic: TGATTTTCTTCTTACCTCAAGTTTTGAACTTCCTCTTGTCACTCCCCCAGgtttgacact ... tttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgataatttaaaactcttatgagcatgtctgacatagaatatgttttcctccagCTTTCTGGCTATATTCCTTGTCCACGTCATCGACTGCCAAG
                           gtctgac  putative branch site (score: 3)
                                          tgttttcctcc  putative PPT
     aatttaaaactcttat  TA-rich tract