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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttataggattaaaaaagataaccccaaatttgaaggacaaaaaatattatttcatttagttcaaacgagcagttcataaccccataccctcttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTCAAGGTTTGAACCTATTGTTACTAAAAGTATTCGGAGTGGGGCTCACATG

Basic information

species Glycine max
transcript GLYMA02G15250.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204315|gb|BI427083.1|BI427083
EST:     GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTG                         GCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTA
genomic: GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTGgtatgtctcc ... cttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
EST: gi|120496303|gb|EH224470.1|EH224470
EST:     GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTG                         GCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
genomic: GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTGgtatgtctcc ... cttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
EST: gi|6073090|gb|AW102477.1|AW102477
EST:     GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTG                         GCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
genomic: GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTGgtatgtctcc ... cttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
EST: gi|57575694|gb|CX548669.1|CX548669
EST:     GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTG                         GCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
genomic: GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTGgtatgtctcc ... cttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
EST: gi|16342328|gb|BI967923.1|BI967923
EST:     GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTG                         GCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC
genomic: GCGTGATCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAACACTCTGgtatgtctcc ... cttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttcatttagttcaaacgagcagttcataaccccataccctcttttttcagGCTTATGTAAACAACCAGATTGTTGCAGCATATACATATGATAAAAGGTTCAAGGTTTGAACCTATTGTTACTAAAAGTATTCGGAGTGGGGCTCACATG
                            tcataac  putative branch site (score: 2)
                                  ccccataccctctttt  CT-rich tract
     ttcattta  TA-rich tract