1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcaatctaaattgtaatgcctagggcttccaacgttcacaacttcacatatcattctgttcctccatttaattgttttggtctcttctctcttttgcagCTATGAAGTTGTTCACGCCTTGAAAATGGACCTGGTGGATGGTCCATTATATTATTATGTGTTCAATGCTCTTCTATATTTCTTGCTAGTTCTTCATATA
species | Glycine max |
transcript | GLYMA02G14060.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
cacatatcattctgttcctccatttaattgttttggtctcttctctcttttgcagCTATGAAGTTGTTCACGCCTTGAAAATGGACCTGGTGGATGGTCCATTATATTATTATGTGTTCAATGCTCTTCTATATTTCTTGCTAGTTCTTCATATA
atttaat putative branch site (score: 4)
ttgttttggtctcttc CT-rich tract
atttaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaatctaaattgtaatgcctagggcttccaacgttcacaacttcacatatcattctgttcctccatttaattgttttggtctcttctctcttttgcagCTATGAAGTTGTTCACGCCTTGAAAATGGACCTGGTGGATGGTCCATTATATTATTATGTGTTCAATGCTCTTCTATATTTCTTGCTAGTTCTTCATATA
- - - - - - - -aatgcct
- - - - - - - - - - - - -gcttcca
- - - - - - - - - - - - - - - - -cgttcac
- - - - - - - - - - - - - - - - - - - - -acttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg