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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttacttcctttccttttattgcatatatagaagaactatcttgaaagcttcttcccctcccagtaagacaattttagttgccatgacattcctacttgtggcttatggtattactacccttctatgcagttgttgggacacatttttatatcaagttgacaaaattaagaatgaatgagttgaataatttcagGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAT

Basic information

species Glycine max
transcript GLYMA02G10680.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10680.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtgtttttacttcctttccttttattgcatatatagaagaactatcttgaaagcttcttcccctcccagtaagacaattttagttgccatgacattcctacttgtggcttatggtattactacccttctatgcagttgttgggacacatttttatatcaagt-tgacaaaattaagaatgaatgagttgaataattt-cagGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAT
                                                                                                        ||  |||||   ||  |    || | |    |   |  |  |  |||| ||  ||| | ||| |  |||    || ||||       || ||| ||||| ||  ||||||||||||||||||||||| || | |||| ||| ||||| ||||| |||||||||||||| || ||||  || ||||||||||||| 
----------------------------------------------------------------------------------------------------tggatgaattatga-gttcttttttttttttaatatatatatgtaattttttaatcccaattgtgaaatgatttcatatcaatggaagtggtacttttcagGGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatttttatatcaagttgacaaaattaagaatgaatgagttgaataatttcagGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAT
               agttgac  putative branch site (score: 4)
                      aaaattaagaatgaat  TA-rich tract