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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttgattgtcattatagggaaaaagaaagacagcttttttttcttttttttttttaagtagaaacctaacaactatttttcctgatatttttggacagTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAG

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 8
----ggtttga---ttgtcattatagggaaaaagaaagacagcttttttttcttttttttttttaagtagaaacctaacaactatttttcctgatatttttggacagTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAG
     || | |   || ||||| |   ||  |  ||   ||   ||  |   |    || | ||||  || ||| |   ||  | ||  | |  ||||| || ||||||||| |||||||||||| ||||| |   ||||||||| ||||||||||||||||| ||||
atgtagtataagtcttctcattcttttgattagtaag--caatcttactacatgacattatcttaa--aggaac-tgctaatcagttaactt--tatttgtgaacagTTGTTTGGTCTTGGTGTTGCCAATATCTGTGGTTCATTCTTTTCAGCATACCCCACGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730274|gb|BM525785.1|BM525785
EST:     CCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAG                         TTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCANNNNNNNCAGCATAC
genomic: CCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAGgtatatttct ... ttttggacagTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATAC
EST: gi|254333563|gb|GR848481.1|GR848481
EST:     CCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAG                         TTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCANNNNNNNCAGCATAC
genomic: CCAAGGCATTAGCAGCGAAAAATGGATACGAGTTGGATTCAAATCAAGAGgtatatttct ... ttttggacagTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttttttaagtagaaacctaacaactatttttcctgatatttttggacagTTGTTCGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTTTTTTCAGCATACCCCACAACAG
                                          tattttt  CT-rich tract
     tttttttaagtagaaa  TA-rich tract