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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccatgttatgatgcaatcttggtcttctgtgtagattgaaaatgctttgttgacatggcatgtttgtatgagtttaagtgttaaactgtgatgctattctacagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA

Basic information

species Glycine max
transcript GLYMA02G08920.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08920.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 3'ss of exon 8
--------gtgagtaccatgttatgatgcaatcttggtcttctgtg--tagattgaaaatgctttgttg-acatggcatgtttgtatgagtttaagtgttaaa----ctgtgatgctattct--------acagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA
        |||| | |  | ||    |||| || |||  || ||||  |     | |      ||| || || |   |  |   |  || || |    |||||     | |    ||||| |        ||||||||| |||||||| ||||||||||||||  | ||||||||||| || |||||||| || ||||||||||||||||| ||||| |||| |||||||||||
gtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatac-tgagatttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193346237|gb|FK309729.1|FK309729
EST:     GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
genomic: GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacca ... tattctacagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
EST: gi|207809012|gb|GD781310.1|GD781310
EST:     GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAA                         GTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
genomic: GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacca ... tattctacagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCT
EST: gi|298164967|gb|HO011016.1|HO011016
EST:     GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGACACAA                         GTTTTCCTTGGTCAAAATGGTGTTCGTGACATCG
genomic: GTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAAgtgagtacca ... tattctacagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacatggcatgtttgtatgagtttaagtgttaaactgtgatgctattctacagGTTTTCCTTGGTCAAAATGGTGTTCGTGACATCGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACA
 tgttgac  putative branch site (score: 3)
                                            ctattct  putative PPT
             tttgtat  TA-rich tract