1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgcatatattttcattgtggcatgcagattaatcgttatgtattttttctgctctagttttgaactggtcactaaaaccttgtcaatttgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCAAACATAACCCAAGGTGCTGATACACACGAGTACGCCAATTCAAATCTCA
species | Glycine max |
transcript | GLYMA02G08870.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAG GGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCAEST: gi|12772609|gb|BG237600.1|BG237600
genomic: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAGgtttgtttct ... tgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCA
EST: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAG GGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCAEST: gi|5057797|gb|AI736273.1|AI736273
genomic: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAGgtttgtttct ... tgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCA
EST: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAG GGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCA
genomic: TCCAGATGGGAGATGGTTTTCAAGCTGAATTGGCAGTACATTTTCTGAAGgtttgtttct ... tgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCA
tttttctgctctagttttgaactggtcactaaaaccttgtcaatttgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCAAACATAACCCAAGGTGCTGATACACACGAGTACGCCAATTCAAATCTCA
cactaaa putative branch site (score: 2)
tcaatttgaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgcatatattttcattgtggcatgcagattaatcgttatgtattttttctgctctagttttgaactggtcactaaaaccttgtcaatttgaaatatagGGAGCCATGTTGTTTGGAAAGCGATTGGAGGTCAACTATTCAAAGCATGCAAACATAACCCAAGGTGCTGATACACACGAGTACGCCAATTCAAATCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT