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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaaatttatctcagaaatttcatcctttagtcgtttctgggtttagagacttatgttatgcttctatgcagttgatcaatcttgtatcccccatctatctgtctttgccatttatttatttatttttggttggacattaattcatgtttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGACCGTTCAAG

Basic information

species Glycine max
transcript GLYMA02G08870.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08870.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtaggttaaatttatctcagaaatttcatcctttagtcgtttctgggtttagagacttatgttatgcttcta---tgcagttgatcaatcttgtatcccccatctatctg------tctttgccatttatttatt------tatttttggttggacattaattcat-gttt----attgcagCCTTGATGAACTACAAGTGAACTACAATAATGACCGTTCAAG
                   |||  || | | | |      || ||  |  |||   | |   ||     || | || |||||||| || ||   | ||  ||| ||| | |||       ||  || |       ||||| ||| || ||| |       |||  | | ||| | ||| |||| | || |    | ||||||||||||||  |||||||||||||||||||||| || || ||
gtaggtttctaacatttctgtaattttattgtctgatgttaactttttttttttccc-tccttgataggagtgtctcatgttatgtttgtactctccatgtgagcaagcatgtggatatgatgcatataagcatttctttcccacttttttttcctacaatatgatggattgtatatttattctttgtattggaaatgcagCCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgccatttatttatttatttttggttggacattaattcatgtttattgcagCCTTGATGAACTACAAGTGAACTACAATAATGACCGTTCAAG
                                 cattaat  putative branch site (score: 3)
        atttatttatttattt  TA-rich tract