Sequence
atgc intronic sequence ATGC exonic sequence...tgagctatcttcagagggttttggttcatgtaagtatgctgtggaaaatccatgagtaattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
Basic information
species | Glycine max |
transcript | GLYMA02G07370.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 3'ss of exon 8
--tgagctatcttcagagggttttggttcatgtaag-tatgctgtggaaaatccatgagtaattttattc----tattgaag----tctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
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gtatcgctctgttatacatgtattcatctaaccatcctaagtaatgtaacatttttaaatcttctggcttggcacactgaatactttcttgtttcgattgtaaattaaaagGAAATCAAGCACAGAAGCCAAGCCGGATCGAGGAATATTTGTAAAGCATTTCAAGAACATTCCAATGGCTGATATGGAATTAGTTCTG
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 3'ss of exon 8
-------tgagctatcttcagagggttttgg-----ttcatgtaagtatgctgtggaaaatccatgag---taattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
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gtaactttgaccctttgatattttgtttagccaatctccacattcatgaaggatcctaattttagaagtgctgatgtagtacaattggttccttccgatgattgtatatgtgcagGAGGGCAGGTACTAAGACTAAGCCTGATCGAGGAATATTTGTAAAGCATTTCAAGAATATCCCAATGGCTGACATGGAAATTGTTCTT
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G011136_T01 (Zea mays), 3'ss of exon 8
----------tgagctatcttcagagggttttggttcatgtaagtatgctgtggaaaatccatgagtaattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
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gtagattcaatgttctgattgctcaaccttcaaattcatg---atggactctggtgttattattcttgatgcagttatatta---tctggcctgattgtgtatg-tacagGAGGGCTGGTACAAAGACTGAACCTGATCGGGGAATATTTGTAAAGCACTTCAAGAATATCCCAATGGCTGACATGGAAATTGTTCTT
upper sequence: GLYMA02G07370.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 3'ss of exon 8
-------tgagctatcttcagagggttttggttcatgtaagtatgctgtggaaaatccatgagtaattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
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aaattaccaaggtccttgtctgaagtgctctccgatcttagcat----ttaaaacaccatggagaat---aattcattggcatctaacaagataggtgactttgcagGCGGGCATGTACGGCAGCAAAACCAGAGCGAGGAATATATGTGAAGCATTTCAAAAACATTCCAATGGCTGATATGGAAATAGTCCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatccatgagtaattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
ttttttcttc CT-rich tract
taattttattctattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagctatcttcagagggttttggttcatgtaagtatgctgtggaaaatccatgagtaattttattctattgaagtctaagttggaaattttttcttcagGCCAGCTAGTTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - ggttttg
- - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - tccatga