1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtgtttcatattggttctacaggttcgaatcatggatattctgtatctcactattagaatattttgaattcttacactgaaattttgtatctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCAGCTGCACAACAAATAATATCATCCATAAGAGTTA
species | Glycine max |
transcript | GLYMA02G07250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAGGATCGAAG GACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTEST: gi|17400406|gb|BM177188.1|BM177188
genomic: GCAGGATCGAAGgtacttttgt ... ctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
EST: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAG GACCCTTATCCA-CACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACEST: gi|17519162|gb|BM188204.1|BM188204
genomic: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgt ... ctactgtcagGACC-TTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAAC
EST: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAG GACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTEST: gi|207788288|gb|GD762100.1|GD762100
genomic: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgt ... ctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
EST: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAG GACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTEST: gi|213587414|gb|DB955538.1|DB955538
genomic: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgt ... ctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
EST: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAG GACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTEST: gi|6454129|gb|AW184877.1|AW184877
genomic: CATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgt ... ctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
EST: CCTGTGGAGGTTACATTGCAGGATCGAAG GACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
genomic: CCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgt ... ctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACT
tctcactattagaatattttgaattcttacactgaaattttgtatctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCAGCTGCACAACAAATAATATCATCCATAAGAGTTA
ttcttac putative branch site (score: 2)
tattagaatattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttcatattggttctacaggttcgaatcatggatattctgtatctcactattagaatattttgaattcttacactgaaattttgtatctactgtcagGACCTTATCCAACACTTGAAGTACGCTTGCCCTGCTCATCTTTATGCAACTTCAATTTCACCACCAGCTGCACAACAAATAATATCATCCATAAGAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - ctacagg
- - - - - - - - - - - - - - - catggat
- - - - - - - - - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa