Sequence
atgc intronic sequence ATGC exonic sequence...ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaaattttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT
Basic information
species | Glycine max |
transcript | GLYMA02G07100.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07100.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 9
ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaa---attttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT
| | | |||| | | | | | || | || || || | | ||| |||| || || | || |||| ||| | | | | |||||||||||||||| | |||||||||||||||||| ||||||
--gtaagct--taatc-ctcgtaccattctttggtagctagttacagttggtcgtgacttta-aggccatgagaccgagaaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
upper sequence: GLYMA02G07100.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 9
----------ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaaattttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT
| || | | || ||| | |||| | | | || | ||||| | | | | ||| |||| | || | | |||||||||||||||| | ||||||||||||||||| ||| ||
gtaagcttaatcctca--taccattctttggtagctagctagttacagttggtaacgactttgaggccacgagac-tgagaaattt--tcttttgtttttg----ggcagGGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaattttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT
gtttaac putative branch site (score: 3)
ttgaatttatagttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaaattttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT
- - - accagca
- - - - - - - - tcaagca