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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatctaagagtaatagcttaaatagtcaattaggatgaaagtcgtgaaacttagttaagcctatcttcttttgctgaattgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAG

Basic information

species Glycine max
transcript GLYMA02G06790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0207g00120.t01 (Vitis vinifera), 3'ss of exon 10
gtaaaatctaagagtaatagcttaaatagtcaattaggatgaaagtcgtgaaacttagttaagcctatcttcttttgctgaattgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAG-------------
                     | |||    |  | | |||     || |  || | ||  ||  || | |   ||   | | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || ||||||             
--------------------gtaaaaggagccctcatgata----tcttttaattgaggaaattctgtatggatt---ttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAGGTTGGATCCCATG

upper sequence: GLYMA02G06790.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0207g00150.t01 (Vitis vinifera), 3'ss of exon 7
gtaaaatctaagagtaatagcttaaatagtcaattaggatgaaagtcgtgaaacttagttaagcctatcttcttttgctgaattgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAG
                      ||||  |  |      |||| | || |  || | ||  ||  || | |   ||   | | || ||||   |  |||    | |||||||| |||||  |||| ||||| ||||| ||||||||||||||||||||  | || ||  | || ||  |  |||| || ||||||
---------------------gtaaaagg--agcccccatgata-tcttttaattgaggaaattctgtatggatt---ttattttctcatgatcttgcatattacagGCTGCCTATAATGTTGGAGGTCAAACAATAAGTGCAGACACAATACAGAATTCCATCCTTGGATGTCGAATATCTCGTCCAGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttagttaagcctatcttcttttgctgaattgctcaatgtgatgccctatgcagGCTGCATATAACATTGGGGGTCATACAATCAGTGCAGACACAATACAGAACACTATACTCAGGTGCCGGTTGCCTCGCCCTGGACAG
                 ttctttt  TA-rich tract