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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattctaaaattggctgcaaattctaacttctttggcacctacacttgatattaatttatagcatctgcttatatgaaccagGAATTAGTGTCCAACGATGTCCTTCCTGATGATTTTGTTCGTGCCATTAAGCACACTGACTACAGTTCT

Basic information

species Glycine max
transcript GLYMA02G06340.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06340.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------gtaaaattctaaaattggctgcaaattctaa-cttctttggcacctacacttg-atattaatttatagcatc----tgcttatatgaaccagGAATTAGTGTCCAACGATGTCCTTCCTGATGATTTTGTTCGTGCCATTAAGCACACTGACTACAGTTCT
                                            |  ||||  ||  ||     | ||    | | |||||    |   |  | ||| || || ||||  | |||     || ||   |||  |||||||| ||  |  |  |||||||||||||||||||| | ||||| |||||| || |||||||||| |||
gtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattataccaagaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacagGAATTTGTACCTGAAAATGTCCTTCCTGATGATTTTCTCCGTGCTATTAAGTACTCTGACTACAGCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctttggcacctacacttgatattaatttatagcatctgcttatatgaaccagGAATTAGTGTCCAACGATGTCCTTCCTGATGATTTTGTTCGTGCCATTAAGCACACTGACTACAGTTCT
                      tattaat  putative branch site (score: 2)
             tacacttgatattaat  TA-rich tract