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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactgtttgtcccctctctttggaaggaggattctagcttctacagtccttaagtatgatatatcaatcattgaagaagttgctttctcatgagacatactttatcccccctttttcagGTTATACGGGCTCGATTGCAG

Basic information

species Glycine max
transcript GLYMA02G05890.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337761|gb|CO981627.1|CO981627
EST:     TTGGAGCAACATCAAAACTTGCTGCAGTACTTCTAACCTATCCATTTCAG                         GTTATACGGGCTCGATTGCAG
genomic: TTGGAGCAACATCAAAACTTGCTGCAGTACTTCTAACCTATCCATTTCAGgtacaactgt ... cctttttcagGTTATACGGGCTCGATTGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcattgaagaagttgctttctcatgagacatactttatcccccctttttcagGTTATACGGGCTCGATTGCAG
                               catactttatcccccc  CT-rich tract
                                atactttat  TA-rich tract