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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatttccttcctttaatgtttacatacgtatcagtggatttgttctgctttcatatttttattcagtttccttttccttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCACAGCATGAATGGTCAGCCAACTTGAAAACAATTCTTGATTGGTCTCCCT

Basic information

species Glycine max
transcript GLYMA02G05800.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207690115|gb|GD671500.1|GD671500
EST:     CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG                         ATAGATTTTGACATATCTGGTCATTGGG
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttccttgcagATAGATTTTGACATATCTGGTCATTGGG
EST: gi|193301452|gb|FK266849.1|FK266849
EST:     CCTATACC-TTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATG                         ATAGATTTTGACACATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA
genomic: CCTATACCTTTTTGCGTAGAACTGGGCAAGATGATGTAGTTGTTCCAATGgtgacatttc ... ttccttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagtggatttgttctgctttcatatttttattcagtttccttttccttgcagATAGATTTTGACATATCTGGTCATTGGGCTGAGCCAATTATTTATAGCTCACAGCATGAATGGTCAGCCAACTTGAAAACAATTCTTGATTGGTCTCCCT
                           tttttattcagtttcc  CT-rich tract
                    tttcatatttttattc  TA-rich tract