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gtaaatgtagtgaagttgagatattttacatgctagttacctagaattgatttcatgaattgatcattttcgtttatacaaacaagttaacacatctggggacctcctttcttttcccagcatgttgcctattttatgtagtgattatgaaattgatttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCTGCACATACTGTCGGTGATGAAAATCATGAGGATGTCACTCCGCCCTCTA
species | Glycine max |
transcript | GLYMA02G04920.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTAGAGAATTTTCAG TTGGTCTTGGATTCACATCGATGGGTTCCCCTGCCCGGAGTTGGCTTTTCTEST: gi|208211795|gb|GE010420.1|GE010420
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
EST: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG TTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCTEST: gi|151410266|gb|EV280081.1|EV280081
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
EST: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG TTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
tttcccagcatgttgcctattttatgtagtgattatgaaattgatttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCTGCACATACTGTCGGTGATGAAAATCATGAGGATGTCACTCCGCCCTCTA
aattgat putative branch site (score: 4)
tttgttctc CT-rich tract
attatgaaattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtagtgaagttgagatattttacatgctagttacctagaattgatttcatgaattgatcattttcgtttatacaaacaagttaacacatctggggacctcctttcttttcccagcatgttgcctattttatgtagtgattatgaaattgatttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCTGCACATACTGTCGGTGATGAAAATCATGAGGATGTCACTCCGCCCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG