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...ctaacagcagtcatcagtaatgtattgaagaacgcaataatactattgcttatagttgtaattttgatacttaatttgtttgtttatttactatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACG
species | Glycine max |
transcript | GLYMA02G04120.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCAAAGGGCCGAATTTGGEST: gi|57575455|gb|CX548430.1|CX548430
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGEST: gi|6134722|gb|AW133115.1|AW133115
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGEST: gi|58016426|gb|CX703168.1|CX703168
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCTTAAGGGCCGAATTTGGEST: gi|16346050|gb|BI971645.1|BI971645
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGEST: gi|19453151|gb|BM954561.1|BM954561
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
EST: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
genomic: GAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGgtgcacaaat ... ctatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGG
ttgcttatagttgtaattttgatacttaatttgtttgtttatttactatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACG
acttaat putative branch site (score: 4)
taattttgatacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacagcagtcatcagtaatgtattgaagaacgcaataatactattgcttatagttgtaattttgatacttaatttgtttgtttatttactatttgcagACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - gcagtca
- - - - - - - - - - - - - - -gaacgca
- - - - - - - - - - - - - - - - - - - - - ctattgc