1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttactacaagcttgtaattttatgctgaagaaaatatgttgtttaacttttaaagaaataaatttggataaacaatgataatttcctggataaaattcagGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
species | Glycine max |
transcript | GLYMA02G01920.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTGCCCAGGGTGGGACAGCTGTAGGGACTGGATTGAATACAAAGAAGGG GTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTEST: gi|192322683|gb|FK015020.1|FK015020
genomic: CTTGCCCAGGGTGGGACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGgtatgtatgc ... taaaattcagGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTT
EST: CTTGCCCAGG-TGGGACAGCTGTAGGGACTGGATTGA-TACAAAGAAGGG GTTTGATGCCAAA-TAGCAGCAGCAGTAGCTGAG-AAACCAATCTGCCTTT
genomic: CTTGCCCAGGGTGGGACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGgtatgtatgc ... taaaattcagGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTT
acttttaaagaaataaatttggataaacaatgataatttcctggataaaattcagGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
gtttaac putative branch site (score: 3)
taaagaaataaatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactacaagcttgtaattttatgctgaagaaaatatgttgtttaacttttaaagaaataaatttggataaacaatgataatttcctggataaaattcagGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
- - tacaagc
- - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac