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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaaatgacatcaaagagaagctagagttttgttttattttattttgtggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATTCGTGTTTACCCGAATGGAAGAGGAAGTTG

Basic information

species Glycine max
transcript GLYMA02G01750.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208084149|gb|GD881425.1|GD881425
EST:     CTGGAACAAGTCGTAGTATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: CTGGAACAAGTCG-AG-ATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|254328074|gb|GR835039.1|GR835039
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|192331369|gb|FK021037.1|FK021037
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|57575003|gb|CX547978.1|CX547978
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|9901204|gb|BE610172.1|BE610172
EST:     ATGAGACATCTGGAACAAGTCGAGATGT-AAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGACAGCTAGGATGTCTTGG-TAAGCGAGTTTGTAGCTGC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAG-GAGTTTGTAGCTGC
EST: gi|207730076|gb|GD708336.1|GD708336
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|58016979|gb|CX703721.1|CX703721
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|254345056|gb|GR855713.1|GR855713
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|85056960|gb|DW585092.1|DW585092
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|192333635|gb|FK026880.1|FK026880
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATTCGTGTTTACCCGAATGGAAGAGGAAGTTG
                                   atttgat  putative branch site (score: 5)
                                         tattttct  CT-rich tract
                         ttattcatacatttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtgaaatgacatcaaagagaagctagagttttgttttattttattttgtggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCCAGCGATGAAGAGAAGAAATTCGTGTTTACCCGAATGGAAGAGGAAGTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA