1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gttggaaatgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaaccatgtacctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATTGTGCCAACAAACAAAC
species | Glycine max |
transcript | GLYMA02G01060.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAAEST: gi|23731376|gb|BU763804.1|BU763804
genomic: TAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
EST: CTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAAEST: gi|16278936|gb|BI943171.1|BI943171
genomic: CTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
EST: ATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
genomic: ATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
aatttcatttgcctttgaacttaccttgatgttttcaaaccatgtacctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATTGTGCCAACAAACAAAC
tacctct CT-rich tract
ttttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaaatgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaaccatgtacctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATTGTGCCAACAAACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT