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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtttttgtaatctttttgatgaatcaatgaccgagttaggtcttgatgtttattctcatttttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA

Basic information

species Glycine max
transcript GLYMA02G00750.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00750.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 3'ss of exon 8
--------gtaagtgtttttgtaatctttttgatgaatcaatgaccgagttaggtcttgatgtttattctcatttttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA
         || |  | | |  | | ||| | |  | | ||    | ||||    |||||| || |     |  | || ||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||  | ||||| |  ||
gtatgtgattatgcatgtgtaaattgtttcttaatattaaaatggctagttctaccttgatattcagag--acctcttgttatcagGATCTGGTGGAAAACAATCCCCTTATTGCGGTTGAAGTTCTCATTAAGTTGATTAATTCAGCTGAAATTGAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562521|gb|BG550741.1|BG550741
EST:     ATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA                         GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG
genomic: ATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG
EST: gi|209723773|gb|BW665682.1|BW665682
EST:     ATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCA                         GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG
genomic: ATGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGAAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG
EST: gi|193568019|gb|FK524356.1|FK524356
EST:     TGATCCAAAACTTGTATATCACTGTGGACTGACACCAAGTAAAGTTGCCA                         GACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG
genomic: TGATCCAAAACTTGTATATCACTGTGGACTGACACCAAG-AAAGTTGCCAgtaagtgttt ... tttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgaatcaatgaccgagttaggtcttgatgtttattctcatttttttttatcagGACCTGGTGGAAAACAATCCCCTTATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA
                       tcttgat  putative branch site (score: 4)
                               tttattctcatttttt  CT-rich tract
                         ttgatgtttattctca  TA-rich tract