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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatctatctgtctgtctataataattatacatatattcatccttgaagctgatacaatatatccaattgaattctcagTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT

Basic information

species Glycine max
transcript GLYMA01G45070.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 8
--------gtatctatctatctgtctg-tctata--ataattataca------tatattcatccttgaagctgatacaatatatccaattgaattctcagTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT
         |    ||  ||  |   | |  |||  || |||||  |       |  ||| ||| | |     |  | || | ||  ||    ||  ||||||||||| || || || || || |||||||||||  ||||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| |||
attccaagattaagattcataaggaaggttcatagcatgattatgaaagaaaccaccttcttccgtaagatctaaccgatttttcatataattttgacagTGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203975|gb|BE330199.1|BE330199
EST:     CTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAG                         TGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCA
genomic: CTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAGgtatctatct ... gaattctcagTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCA
EST: gi|15203170|gb|BI425938.1|BI425938
EST:     CTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAG                         TGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCA
genomic: CTCCAAAGAGGGTTTTTCATTTCCTACGTGATCAAAACTCAAGAAATGAGgtatctatct ... gaattctcagTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatacatatattcatccttgaagctgatacaatatatccaattgaattctcagTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT
                       agctgat  putative branch site (score: 4)
                                                ttctc  putative PPT
                            atacaatatat  TA-rich tract