1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gttaatttcagtcatgacctcttggaagtaattatgtcttttgcttctttggatattttgtggttcccattcctaattcattttttaatatctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGA
species | Glycine max |
transcript | GLYMA01G43470.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG GGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTEST: gi|209718138|gb|BW657797.1|BW657797
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
EST: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG GGTCAAAATCAGAGTTTTGATCTTCCTATTAAEST: gi|308097989|gb|HO761160.1|HO761160
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAA
EST: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG GGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
tctttggatattttgtggttcccattcctaattcattttttaatatctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGA
attcctaattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatttcagtcatgacctcttggaagtaattatgtcttttgcttctttggatattttgtggttcccattcctaattcattttttaatatctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA