1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattcatttccacttctatttattttctcttatgttggatctctactttcttttagttttacaatatttcctttttttcttttgtaacatattagggtgcactttacttattgtctcattatattggtacttgatattaattttcatgctcactttactgtctctgacgtacctcaattttaaaatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
species | Glycine max |
transcript | GLYMA01G41570.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAA GAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAATGCCATEST: gi|21285430|gb|BQ473301.1|BQ473301
genomic: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAAgtattcattt ... aatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAATGCCAT
EST: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAA GAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAATEST: gi|9901990|gb|BE610958.1|BE610958
genomic: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAAgtattcattt ... aatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
EST: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAA GAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
genomic: TTCTTGCAGACACCCTCATCAAGGGAGAGGTTTACAGTAGCTATATTCAAgtattcattt ... aatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
aattttcatgctcactttactgtctctgacgtacctcaattttaaaatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
tcaattttaaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatttccacttctatttattttctcttatgttggatctctactttcttttagttttacaatatttcctttttttcttttgtaacatattagggtgcactttacttattgtctcattatattggtacttgatattaattttcatgctcactttactgtctctgacgtacctcaattttaaaatattgcagGAACACTTGGCTCCTAGTGGATATCTTAAATTACCGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA