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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatattgtaaagttaaaaatacatgtttttcctttaattaatttcctgttgaattctacatgaacaccccttttgactcctcattatgtttcattcagCTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTATGGGCAAGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTC

Basic information

species Glycine max
transcript GLYMA01G39520.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346682|gb|BM891562.1|BM891562
EST:     TGCCACCTGAATCTAATTGGCAGAGTGGGGGAAGCAAGCCTAAGGTTCAT                         CTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTAT
genomic: TGCCACCTGAATCTAATTGGCAGAGTGGGGGAAGCAAGCCTAAGGTTCATgtaatatttt ... tttcattcagCTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgttgaattctacatgaacaccccttttgactcctcattatgtttcattcagCTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTATGGGCAAGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTC
                           ttttgac  putative branch site (score: 3)
                                             tttcattc  putative PPT
                                       attatgttt  TA-rich tract