1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaatcgaacctcttgattatataaggtagggattaacttccactcttgctagtttattgatttatttgaaccttatgcatttggacattaatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTCCTCCTTACTTGATGGATGAAAAGATCATGGGTAACCAATTTGTAGAAT
species | Glycine max |
transcript | GLYMA01G39020.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAGAATCTTEST: gi|208187394|gb|GD981322.1|GD981322
genomic: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAGAATCTTEST: gi|21255723|gb|BQ452611.1|BQ452611
genomic: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAGAATCTTEST: gi|14011458|gb|BG726380.1|BG726380
genomic: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: GTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTEST: gi|21677043|gb|BQ629394.1|BQ629394
genomic: GTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAGAATCTTEST: gi|8826467|gb|BE210197.1|BE210197
genomic: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: GTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTEST: gi|16342295|gb|BI967890.1|BI967890
genomic: GTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
EST: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG AGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
genomic: CTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGgtaatttcta ... aatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTT
cttgctagtttattgatttatttgaaccttatgcatttggacattaatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTCCTCCTTACTTGATGGATGAAAAGATCATGGGTAACCAATTTGTAGAAT
cattaat putative branch site (score: 3)
tagtttattgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatcgaacctcttgattatataaggtagggattaacttccactcttgctagtttattgatttatttgaaccttatgcatttggacattaatttgacagAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTCCTCCTTACTTGATGGATGAAAAGATCATGGGTAACCAATTTGTAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -cctcttg
- - - - - - - - - - - - -ggtaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt