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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctattttcctttaccgtgactcaaattttgtgtccatttttgaattcttggctgtaatttgaatgattattttatttttcttacatggatgtttccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTAGAAACTGAATAGCCAATTTCAGTGATCTCCAACTAAATATGTAAAATGT

Basic information

species Glycine max
transcript GLYMA01G37790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37790.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g02050.t01 (Vitis vinifera), 3'ss of exon 7
gtgagctattttcctttaccgtgactcaaattttgtgtccatttttgaattcttggctgtaatttgaatgattattttatttttcttacatggatgtttccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAA--CTTCTTTAGAAACTGAATAGCCAATTTCAGTGATCTCCAACTAAATATGTA-AAATGT
                    |||| |  || | |   | | ||| || |  ||        |||  |   ||||  ||     ||||||||||||| || |  |||||||||  |||||||| | ||||| ||||||||||| ||||| | |  ||  | | ||  ||      || |   || | ||   ||  | || | ||    ||  
--------------------gtgagtagaagtgt---ttcctttctgcagcct--------attctagccattaactt-----tcttacatggatggttgctattgcagGGATCTGTATGCTTCCTACATTGTTGAGAGCTTGAGGCAGTGAGACTCATCTGGAGGCTATGACCCCGACCCCA-TAATTATCATTTTAAGAAGTCTGGAT--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403411|gb|EV273221.1|EV273221
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTT
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTT
EST: gi|27423981|gb|CA935501.1|CA935501
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|151412819|gb|EV282631.1|EV282631
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|8402595|gb|BE058229.1|BE058229
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192330469|gb|FK021214.1|FK021214
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|192330470|gb|FK021215.1|FK021215
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA
EST: gi|151412430|gb|EV282242.1|EV282242
EST:     GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCAT                         GGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAAGCACTAACTTCTTTA
genomic: GAAGACTTTCTACCGGCTGAAGCTGCCATTGATGCCATCAATTACTCCATgtgagctatt ... ccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgtaatttgaatgattattttatttttcttacatggatgtttccctttgcagGGACTTGTATGCTGCTTACATAGTTGAGAGCTTAAGGCACTAACTTCTTTAGAAACTGAATAGCCAATTTCAGTGATCTCCAACTAAATATGTAAAATGT
                            ttcttac  putative branch site (score: 2)
                                        tgtttcccttt  putative PPT
     taatttgaatgattat  TA-rich tract