1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctaaaaaaaatgaaattcctgtcatagtttactagtttatgctaaatatgattcatgtctttattggtatgaatagtaactctttcttgtctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCTCTTATAGGTTTGGATGTACAAGCTG
species | Glycine max |
transcript | GLYMA01G35650.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGGGAGGAAAGTGGATATCCTATCTGAG TGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGEST: gi|208317481|gb|GE112314.1|GE112314
genomic: CTGGGAGGAAAGTGGATATCCTATCTGAGgtatatgctg ... ctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAG
EST: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAG TGCCAATCGTTGATTGAAGAATCATTGGCATCACACTTCTTACAGATTTGCEST: gi|207774490|gb|GD744648.1|GD744648
genomic: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAGgtatatgctg ... ctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACAC-TC-TACAGATTTGC
EST: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAG TGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGEST: gi|193326525|gb|FK291552.1|FK291552
genomic: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAGgtatatgctg ... ctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAG
EST: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAG TGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAG
genomic: TTTATGCATTTGAAGTAGCAGCTGGGAGGAAAGTGGATATCCTATCTGAGgtatatgctg ... ctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAG
atatgattcatgtctttattggtatgaatagtaactctttcttgtctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCTCTTATAGGTTTGGATGTACAAGCTG
tagtaac putative branch site (score: 1)
ctctttcttgtctact CT-rich tract
tctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaaaaaatgaaattcctgtcatagtttactagtttatgctaaatatgattcatgtctttattggtatgaatagtaactctttcttgtctacttgcagTGCCAATCGTTGATTGAAGAATCATTGGCATCACACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGCTCTTATAGGTTTGGATGTACAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- aaaaaaa
- - - - - - - - -cctgtca
- - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga