1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacctgtatagtttaataaaaccagttatttgtatagtagccatagtgcaatttacctgacttatggttgaaatctaattttattttcttgctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTAGATATTGCTGTGGACCTCTGGCGTTTTGTACCAGCAGCAAGTCATCAAA
species | Glycine max |
transcript | GLYMA01G34690.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAG CTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTAEST: gi|208197916|gb|GD998031.1|GD998031
genomic: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAGgttagagaag ... gctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTA
EST: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAG CTTCGATATGATGTACCGAAAATGTACAAEST: gi|193548510|gb|FK504943.1|FK504943
genomic: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAGgttagagaag ... gctttggcagCTTCGATATGATGTACCGAAAATGTACAA
EST: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAG CTTCGATATGATGCACCGAAAATGTACAAATTTCAEST: gi|193549965|gb|FK505938.1|FK505938
genomic: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAGgttagagaag ... gctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCA
EST: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAG CTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTAEST: gi|193490975|gb|FK455148.1|FK455148
genomic: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAGgttagagaag ... gctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTA
EST: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAG CTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTA
genomic: GAACAGCATTAAGGGATTTCAATGCTAGCAGTGCTGAAGTTATATGTGAGgttagagaag ... gctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTA
gtgcaatttacctgacttatggttgaaatctaattttattttcttgctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTAGATATTGCTGTGGACCTCTGGCGTTTTGTACCAGCAGCAAGTCATCAAA
atctaat putative branch site (score: 3)
ttttattttcttgctt CT-rich tract
ttgaaatctaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctgtatagtttaataaaaccagttatttgtatagtagccatagtgcaatttacctgacttatggttgaaatctaattttattttcttgctttggcagCTTCGATATGATGTACCGAAAATGTACAAATTTCATAAGAAGAAGGAAGTAGATATTGCTGTGGACCTCTGGCGTTTTGTACCAGCAGCAAGTCATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-acctgta
- - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - agtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgact